Hello again my friend,
Yes, I know that situation well from many previous times myself. You're right it does happen... frequently, but be content with the way you played it. Over the longer term, you should win far more than you lose when you get the money in ahead.
I think I'm right in quoting fellow members as saying that to get a decent sample size (to assess variance), you need 100k hands, so try not to worry about the odd hand that gets sucked out. Difficult I know.
I can help you with the software side of things. Check out the PokerStrategy Elephant software tool. It will keep a database of your hand history, provide anaylse of your play and also give you a helpful Heads UP Display whilst playing too. It's free to members and constantly being developed.
Other software is available, such as HEM, PT3 which both cost money, but maybe start out with the Elephant and see how you get on.
Shout if you have any questions, we're all friendly and helpful here 
Best regards,
Bart